Fahamu in Oxford, England runs courses in Human Rights and NGO Management using face-to-face and on-line teaching. 

PCM Group in Belgium offer courses in the following subjects (in English & French):

• PROJECT CYCLE MANAGEMENT (PCM)
• ADVANCED PCM
• MODERATION of participatory analysis and planning workshops (GOPP)
• MONITORING & EVALUATION.

The AIDS Alliance has an NGO Capacity Analysis workshop available on its site as a PDF (1.3 Mb). Although it is designed for NGOs facing the AIDS epidemic it would be a useful exercise for any NGO.

As responses to HIV/AIDS are scaled up, NGOs and CBOs are finding they need to develop their own capacity to deliver and support programmes. This toolkit can be used by organisations themselves or by people who support NGOs and CBOs to identify capacity building needs, plan technical support interventions and monitor and evaluate the impact of capacity building.

This toolkit, based on interviews with experienced research fundraisers in both developing and developed countries, provides practical suggestions when applying for funding and writing proposals.

And the IPPF also has a JTF Resource Pack to help you in proposal writing especially in the fields of HIV/AIDS and Reproductive Health. It takes you through the Logical Framework Approach.